Flywheel Tools
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Contents:

  • BIDS & FlywheelTools Explained
  • Installation
  • Quick start guide
  • Step-By-Step Guide
  • The Heuristic File
  • Usage
  • Tips & Tricks: Curating Creatively
Flywheel Tools
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  • FlywheelTools: Software for HeuDiConv-Style BIDS Curation On Flywheel
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FlywheelTools: Software for HeuDiConv-Style BIDS Curation On Flywheel¶

Documentation Status https://circleci.com/gh/PennLINC/fw-heudiconv.svg?style=shield https://zenodo.org/badge/DOI/10.5281/zenodo.4752798.svg?style=shield

FlywheelTools is a suite of software tools for curating your data into BIDS on Flywheel. It’s comprised of 2 parts:

fw-heudiconv, which is a Python-based tool kit for curating BIDS data on the Flywheel platform, and flaudit, which is a Flywheel project auditor.

Full documentation at readthedocs

License: BSD-3

Contents¶

Contents:

  • BIDS & FlywheelTools Explained
    • General Workflow
  • Installation
    • Install & start up Miniconda
    • Start a virtual environment
    • Download fw-heudiconv from pip
    • Download the Flywheel SDK & CLI
    • Updating fw-heudiconv
    • Appendix — fw-heudiconv-validate
  • Quick start guide
    • fw-heudiconv at the Command Line
    • fw-heudiconv as a Flywheel Gear
    • flaudit as a Flywheel Gear
  • Step-By-Step Guide
    • Step 1: Understanding Your Dataset in the Context of BIDS
    • fw-heudiconv-tabulate
    • Developing a Simple Heuristic
    • Curating The First Image with fw-heudiconv
    • Adding More Images
    • Wrapping Up
  • The Heuristic File
    • How fw-heudiconv Uses a Heuristic
    • Heuristic Functions
    • A Real Example
  • Usage
    • Tabulate
    • Curate
    • Export
    • Validate
    • Clear
    • flaudit
  • Tips & Tricks: Curating Creatively
    • Dynamically Replacing Subject/Session Labels
    • DataFrames to Strings
    • Arterial Spin Labelling Data

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2020, Tinashe M. Tapera, Matt Cieslak, PhD Revision ad06d0e6.

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