FlywheelTools: Software for HeuDiConv-Style BIDS Curation On Flywheel

FlywheelTools is a suite of software tools for curating your data into BIDS on Flywheel. It’s comprised of 2 parts:

fw-heudiconv, which is a Python-based tool kit for curating BIDS data on the Flywheel platform, and flaudit, which is a Flywheel project auditor.

Full documentation at readthedocs

License: BSD-3

Contents

Contents:

• BIDS & FlywheelTools Explained
  • General Workflow
• Installation
  • Install & start up Miniconda
  • Start a virtual environment
  • Download fw-heudiconv from pip
  • Download the Flywheel SDK & CLI
  • Updating fw-heudiconv
  • Appendix — fw-heudiconv-validate
• Quick start guide
  • fw-heudiconv at the Command Line
  • fw-heudiconv as a Flywheel Gear
  • flaudit as a Flywheel Gear
• Step-By-Step Guide
  • Step 1: Understanding Your Dataset in the Context of BIDS
  • fw-heudiconv-tabulate
  • Developing a Simple Heuristic
  • Curating The First Image with fw-heudiconv
  • Adding More Images
  • Wrapping Up
• The Heuristic File
  • How fw-heudiconv Uses a Heuristic
  • Heuristic Functions
  • A Real Example
• Usage
  • Tabulate
  • Curate
  • Export
  • Validate
  • Clear
  • flaudit
• Tips & Tricks: Curating Creatively
  • Dynamically Replacing Subject/Session Labels
  • DataFrames to Strings
  • Arterial Spin Labelling Data

Indices and tables

• Index
• Module Index
• Search Page